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SRX1629201: GSM2086255: ateles_fusciceps_R223_L4; Ateles fusciceps; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 60.5M spots, 12.1G bases, 8.5Gb downloads

Submitted by: NCBI (GEO)
Study: Expression Profiling of Term Placenta in Viviparous Mammals by RNA-Seq
show Abstracthide Abstract
The placenta is arguably the most anatomically variable organ in mammals. Understanding gene expression patterns among placentas from multiple species can illuminate the molecular basis of placenta function as well as potentially enrich our knowledge of the biology of obstetrical syndromes. We measured the expression profiles of the term placenta of multiple therian mammals using RNA-Seq. We identified multiple genes and transcripts which are differentially expressed across lineages including prolactin, relaxin, and galectins, as well as identifying the non-housekeeping genes which are core to placenta function (such as components of annexin complexes) in all species studied. Overall design: RNAseq data from term placentas of 8 species with one sample per species
Sample: ateles_fusciceps_R223_L4
SAMN04546398 • SRS1336844 • All experiments • All runs
Library:
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The villous portion of the tissue was homogenized in Trizol resulting in the isolation of total RNA following the manufacturer's instructions (Life Technologies, Grand Island, NY). The RNA was further purified using Qiagen’s RNeasy Midi Kit in conjunction with the RNase-Free DNase Set following the manufacturer’s protocol to remove any contaminating DNA from the sample (Valencia, CA) RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2086255
Links:
Runs: 1 run, 60.5M spots, 12.1G bases, 8.5Gb
Run# of Spots# of BasesSizePublished
SRR322242660,484,92312.1G8.5Gb2017-05-15

ID:
2325937

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